cram-viewer

CRAM alignment summary viewer with container metadata, reference information, and file structure display.

Features

• CRAM file definition header parsing (magic, version, file ID)
• Container header metadata display (length, reference info, record count)
• File version detection (CRAM 2.x / 3.x)
• Container listing with position and size information
• Reference-based compression info display
• Note: Full record decoding requires a reference genome; this viewer shows file structure and metadata

Supported Extensions

• .cram

Installation

Install from the Plugins tab in the AutoPipe desktop app.